rs50061772 SNP Detail

Summary

• ID
  rs50061772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153264730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACTGCTGC AGCGCTTCTC GCCACCCAGG CCACTACTAA
  CCCCTTCCTG GACTTCTTGT TCTAGCCTCA GGACCTTGCA GCCTGCCCTG CCAGCTCCCA
  Y
  CCCCTAACCC CTTAGCACTG GGGTCTCTAG GCTGGGTTAG AGTGTTGTCT GCCCTGCTCC
  TTCCGGTTGG GCCCATTTCA GAGGGCTTTC ATGGCCTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147993393	ENSMUSSNP975632	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50061772					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153264730 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nol4l	nucleolar protein 4-like			Intron
				Noncoding-Transcript-Variant
Rr567634	regulatory region 567634			382 bp distal
Rr567635	regulatory region 567635			269 bp proximal
Rr567636	regulatory region 567636			1774 bp proximal
Tssr699	transcription start site region 699			1883 bp downstream