rs50061766 SNP Detail

Summary

• ID
  rs50061766
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30753668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA TGGAACCAGA CAATTGCCCC
  T
  GACCACAGCC CTACAACCCC GGAGT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134732444	ENSMUSSNP5986465	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50061766					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30753668 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13042	CpG island 13042			1844 bp proximal
Lrrc31	leucine rich repeat containing 31			Intron
				Noncoding-Transcript-Variant
Rr574816	regulatory region 574816			301 bp proximal
Tssr32902	transcription start site region 32902			246 bp downstream
Tssr32903	transcription start site region 32903			336 bp downstream