rs50061225 SNP Detail

Summary

• ID
  rs50061225
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72305315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAAACA GAATAAAAAT
  AATAATTTTT GAAAGATGAG ATTTCTGTAT TTACTGTTTC CAAACATCGA AACTTCCCAC
  CTCTCTCAAC TCAGATACAG GCATGAGCCA TGTAGGAAGG AGCTCTAAAT TAAGAGTTAA
  ACACGGGGCT GGGAGGCTTG AGAAAGGCAA TACACTTAGT ACGTATATGA GATGTATGCA
  C
  TGGGGAGTGC CTAGAACATG TGTAAGTGTA AGTATATGAC ATGTATGGAA AGACAAGGCG
  ACTGGGGAGT GCCTGGTCTG GGAGAGCTTG CCTTCTACGT CCGAGGCCCT GCCGCTAACA
  CTATGAAAAA GATGAGAAAG TTAAAAACAA AGTGAGCGAG CAGGCAAGGG TGGTGACCTG
  GTTACCTTCT CCGTGATGCC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133283844	ENSMUSSNP6993241	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50061225					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72305315 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr632133	regulatory region 632133			1689 bp distal
Rr632134	regulatory region 632134			1779 bp distal
Rr632135	regulatory region 632135			1423 bp distal
Usp39	ubiquitin specific peptidase 39			Intron
				Noncoding-Transcript-Variant