rs50061012 SNP Detail

Summary

• ID
  rs50061012
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152592589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATGCCAT ATGGGTTTGA
  AATGGCTGGG ACCAAGGTCA CACCCTGGCT AGATCTGGGA AGCAAGAGCT GATTGTGGGG
  GTGGGAAGGG GGAGTTTCTT TTACTTTATC CCTGTAGGGG GCACAGTTCT TTTCTTAAAG
  TGCTGTCTCT AGACCAAGGC TGCTTTAAAT CTTCTCACTG ATGTGGGTAA AATGAAACAG
  G
  AATCAGAAAG GCCCAAAATG ACTCACAAGA CTTTCATGGG CTCCTTATAA AACCCAAGGT
  CCCTGGGGAC TTTCCATAAG CAAGTCAATT GTTTAAGGAA AAAGGAAAGG AAGAAAAACA
  GCAAGAATGA CTCTATCAAT ACCCAAACAG GCCTTAGGTA AGAAAAGTTT ATATGGCCCT
  AGATGGTATA TGGATATATG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321029044	CHEV_3_152549916	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50061012					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152592589 () rs orientation: forward

Symbol	Name	Function Class
D3Mit322	DNA Segment, Chr 3, Massachusetts Institute of Technology 322	278 bp distal
Rr587620	regulatory region 587620	73 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron