rs50055614 SNP Detail

Summary

• ID
  rs50055614
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108383278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGAGAAC GGCCTCCCGA GGGACAGTTT TCATGTGGGC
  ATCTGCAGTC TACATCCAGG CATGTGCAGG GAGCTGGAAA TGAGCCATTC TGCAAAGCCA
  S
  AATGGAAGGT GGCTCTGTCA GGGGCCCTTG GGGGCAGAAG GGAAGTTGCC CATAGTACCT
  GTAGGGATTG GCTCTTGGAC CTTCTCGGTC CTCACATAC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133501689	ENSMUSSNP6743195	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50055614					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108383278 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636092	regulatory region 636092	1569 bp proximal
Rr636093	regulatory region 636093	1760 bp proximal
Rr636094	regulatory region 636094	1793 bp proximal