rs50053867 SNP Detail

Summary

• ID
  rs50053867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127687996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACCCACC ACATTGGCCC
  CGCCCAAGAG AAGAAGGCAT TGCAGAGGGC TGTGGCCTTC AGTTCCCTCT CAATGTCTAG
  GAGGCTGAGG CTCTGGAAAA GCAACTGAAT ACACTAAGCA GAAAGACGGC AGGAAAACGG
  CCACTGCCTC CTTTCAACCT AACTAGTTTT GCTTCCATTT TGGTTTCTGT CATTGATTTT
  Y
  TATGGAAAAA TTCTGTGTAA ATTTTAAATA GTTTAGAAAG GAATTTTCCA GAATTATTCA
  ATTTATAATT TGGAGTTCTG GTATCCTTAA AACCAATCCA AAAAGAAGAA CAGGAGAATA
  TCTCCATGAT GAAAAATTAA AATGACTTTT TGGAATGTTT TATGTTGTTA ACTCTAATTC
  TCCTTCAGAT AGTATGTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135874448	ENSMUSSNP6222720	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320957980	CHEV_3_127597265	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50053867					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127687996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	1367 bp proximal
Fam241a	family with sequence similarity 241, member A	Intron
Rr398009	regulatory region 398009	1926 bp upstream
Rr584895	regulatory region 584895	40 bp distal
Rr584896	regulatory region 584896	1651 bp proximal
Rr584897	regulatory region 584897	1931 bp proximal
Tssr35606	transcription start site region 35606	257 bp downstream
Tssr35607	transcription start site region 35607	1161 bp downstream
Tssr35608	transcription start site region 35608	1873 bp downstream
Tssr35609	transcription start site region 35609	1900 bp downstream
Tssr35610	transcription start site region 35610	1924 bp downstream