rs50050846 SNP Detail

Summary

• ID
  rs50050846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120871594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGGAATT CCCATGAGAC
  CCTCACAATA TCTCGTCTCT GGAAGTTTCC ACGGGAGGGG GCACTTTTAG AAGAGCCTGG
  AATAAGGCAG ATGCCACTGT GGCTTGGTGT AGCCAGATAT GGTGGAATAT GTGAAGGGGA
  AGAAGGGGTG ACCCCAAATG TCCATTCTGC TTCCTGTGAC ACTCATACCT TCCCACTCCC
  Y
  GGCGCTCTGC AGGAAATCAG TCCCCCAACT GGTGTGTCCC AAAAGATGGG TTTGTTTATT
  CAACCATGAG GGTGCAACGT TTTGACTACG CTTATGCACC AGAAACTATA TTAGATTCTC
  ATAAATTAGA TCAGTGTTTT TCTGAGCTTA GGAGCCTGTG TTCCAGCAGG GGGAGACAGA
  CACTTCTAGG TGCCTGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147376990	ENSMUSSNP3510131	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320481395	CHEV_2_120866849	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50050846					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120871594 () rs orientation: forward

Symbol	Name	Function Class
Rr563766	regulatory region 563766	1508 bp distal
Rr563767	regulatory region 563767	79 bp proximal
Rr563768	regulatory region 563768	159 bp proximal