rs50045639 SNP Detail

Summary

• ID
  rs50045639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76868136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGTCGGC CATTCCTCTT
  TGGACCCATG CCCCTCTCCA TTCGTTCTAC TTTGCTGCCC TCGCAAGTAC TCCGCCAAAA
  CCCATCAGGA GGAAAGAGGC TGGTTTCAGG GAGCCCCGCC CTCTCCCAAC CCACCTCAGG
  CTGCTAGCAG CCTCCACCTG CTGAGCATCA GCTGAACATC CCTGCTGGGG TGAGAGTTTG
  R
  AAGATTGGGG GATTGGTGGT GAAGGAGGGT GGGGTGGGGC CTAAAACGCT TAGGCCAGAC
  TTCTGTCCCT GTTAACAGTC AAGTAGGTTG ATACAAGGTG AGTAAGGTTT TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTAGGGGGT CTCCATGCAT AGCTCAGCGC
  AATCCGTCGG TGCCCTTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52376003	NES15271669	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50045639					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52376003	NES15271669	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76868136 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1753	CpG island 1753			164 bp proximal
Rr434376	regulatory region 434376			within coordinates
Rr434377	regulatory region 434377			351 bp proximal
Rr434378	regulatory region 434378			420 bp proximal
Rr434379	regulatory region 434379			694 bp proximal
Rr434380	regulatory region 434380			841 bp proximal
Rr434381	regulatory region 434381			977 bp proximal
Slc19a1	solute carrier family 19 (folate transporter), member 1			Intron
				mRNA-UTR
Tssr94203	transcription start site region 94203			47 bp downstream
Tssr94204	transcription start site region 94204			25 bp downstream
Tssr94205	transcription start site region 94205			409 bp upstream
Tssr94206	transcription start site region 94206			938 bp upstream
Tssr94207	transcription start site region 94207			958 bp upstream
Tssr94208	transcription start site region 94208			988 bp upstream
Tssr94209	transcription start site region 94209			1002 bp upstream