rs50039880 SNP Detail

Summary

• ID
  rs50039880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:73261797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTCCCTG TAGCTGAATT
  TATTACTTGC TCAACATTTG CATTGATGAA TTGAAGGTCA TACACATACA TTTACAAATC
  AACTGTAACC CAGCTATAGC AGCACCTACA ACAATTAAAA TAGGAAGAGG ATTGTAGACA
  CAGCAGTGAA TTTAAACCAG AGGAGGAATC TAGGAATCCA TTTTTACCAT CCATAAAACC
  Y
  TTCCTGAATA ATGTATCCCA GAGAGCTGTC AGAGCTTGAT AATCTTCTTG ACAGTGTCAC
  ATGTATTTCC AAATCTCTTG TCCTTTTGGA TGATCATACA AGCCTCACAA AACTCAAGGA
  CCCAAAGGTT GAATAATTTA CTTCAAATCA CATAGCCACA CAGTTCTAAG TTTTCACCTT
  TAAATCTGAG GGCATGCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325246937	CHEV_16_73465154	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50039880					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:73261797 () rs orientation: forward

Symbol	Name	Function Class
Gm18825	predicted gene, 18825	86 bp upstream