rs50039648 SNP Detail

Summary

• ID
  rs50039648
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:92197316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTCCCT CCTGCCCTTC
  CTTTCTGACC TCTCCCTGTG CCAACTCAGT CAGACATACC CCTCCTCTGT TCAGCAGCCC
  CAGAGGATCT GACAGGCTCA GGAGAAATGA CCTTTTTCAG TATTAGGATG CTCTTGCAGG
  CTTAGGACCC TGGCTTGACC AAATGACTTC TTTCCCACTC TTTCTCGGCG GTTCCGGCAG
  M
  TAGACTCGGG CTTATTCACA AAAAGGCAGC AGGCAGAAGC AGATGAGGTC CCTTAGGCCT
  GAGTCCAGAG CTACAACAGT ATCACTTCTG CTGACCAAAG TAAGCCACAA GGCCAGCCTA
  CATTGAAACA CTGAGAAAAA TAGACTGACC TCCTTCCAAG TACCGCAAAG ATGGTTCCTT
  AGTCTTGGTC ATGCTCACCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60911637	NES16220142	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50039648					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60911637	NES16220142	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:92197316 () rs orientation: forward

Symbol	Name	Function Class
Rr634622	regulatory region 634622	446 bp distal
Rr634623	regulatory region 634623	673 bp distal
Rr634624	regulatory region 634624	449 bp distal
Rr634625	regulatory region 634625	1317 bp proximal