rs50039337 SNP Detail

Summary

• ID
  rs50039337
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150278093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAG CCGTAGAAGA AAGAGTCAAA
  R
  AGACCTGGCT TCCCTCGGGA GGGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148049906	ENSMUSSNP4729060	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50039337					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150278093 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605219	regulatory region 605219			386 bp proximal
Rr605220	regulatory region 605220			476 bp proximal
Tssr44724	transcription start site region 44724			1120 bp upstream
Tssr44725	transcription start site region 44725			1078 bp upstream
Tssr44726	transcription start site region 44726			1051 bp upstream
Tssr44727	transcription start site region 44727			1003 bp upstream
Tssr44728	transcription start site region 44728			122 bp downstream