rs50039002 SNP Detail

Summary

• ID
  rs50039002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126776699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGATTTTA AAAACATTTC
  CAGATTTAAT ATACAGCCAA GCTTAAAAAC CTTTCATTAT TTAGTGTTTC AGAGTGCTGG
  CCTGGACCAC GGCTCCTGAC TGCAGTTTCA GCATCACCAT CCAAACCTAT TGAATCCGAG
  AATCAGAGAA TGAGCATTCC AGAGACCTCA TACTGCTACC TCAGTTTAGC TCAAATAAAT
  Y
  TTACTCCTGA CCTTCTAAGT TGTCTCAGGG GAACATTTAT ACTCTTAAGA GCTTCTTGTT
  GGATGAGAAT TCCTAAAATA GGACACGAAA AAAGGAAAAA CTATACAACA ATAAAATCAA
  ATTCACTTCA CCAAAATAAA AACCTCTGTT CTTTGGAAGA TATGTTTTTT AAATATTTAT
  TTGTGTGTGT ACTTTCATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147514385	ENSMUSSNP99913	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320498586	CHEV_2_126760515	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50039002					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126776699 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12210	CpG island 12210	1375 bp distal
Gm75308	predicted gene, 75308	within coordinates
Rr564422	regulatory region 564422	1692 bp distal
Rr564423	regulatory region 564423	1703 bp distal
Rr564424	regulatory region 564424	1555 bp distal
Rr564425	regulatory region 564425	1054 bp distal
Sppl2a	signal peptide peptidase like 2A	1544 bp upstream
Tssr26085	transcription start site region 26085	1689 bp upstream
Tssr26086	transcription start site region 26086	1646 bp upstream
Tssr26087	transcription start site region 26087	1615 bp upstream
Tssr26088	transcription start site region 26088	1552 bp upstream
Tssr26089	transcription start site region 26089	1538 bp upstream
Tssr26090	transcription start site region 26090	899 bp upstream