rs50036982 SNP Detail

Summary

• ID
  rs50036982
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:3445352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCAAACA CTTTCCCTGC
  TGAACGGGAA GGGGAGATGG CTACCTTGTG AAAAACTCCC TCGCCAGGTG CAAGACAGTT
  CAGGGGGTAG CTCTGGAGGG ACTGGAGGAA TTTATTTTTA AAGGAGGAAT GCAGCTAGCT
  AGCTGAGGGA GGAAAACTTT AAAACAACGT CCTCCCTGAG AGCACGGTGC TGGTCAGTTC
  M
  TGCTGCCATC TGTCTCTCCT GGGATCTGTT TCTTTCTCAT TCAAATCAAG TTGGGAGTAA
  ACTGAATTCA GCTGTTTTCT CTGCTTTTGT GAGCAAAAAG AGCCATCCCT TCAATTAAGT
  TTAAAAGGTA GTTAGGCTCT GTTAGAATGT GGCTCCTTTG GTGGCTTTCC TGAGTGCACA
  AAGCCCCAGC TCTCTGTAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61077154	NES16044669	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50036982					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61077154	NES16044669	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3445352 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgef18	Rho/Rac guanine nucleotide exchange factor 18			Intron
				Noncoding-Transcript-Variant
Cpgi20017	CpG island 20017			2000 bp distal
Gm64114	predicted gene, 64114			within coordinates
Rr381632	regulatory region 381632			within coordinates
Rr658903	regulatory region 658903			1716 bp distal
Rr658904	regulatory region 658904			276 bp distal