rs50035579 SNP Detail

Summary

• ID
  rs50035579
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100691631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACCAAAG GCCTCATTTG
  AGGTTATTTC AGACAGTACT AGGCACAACG ATAACTTCTC ACGCAGAAAT CTGAAGAACC
  TGCTGGTGAT GGTAGCCTCC AGGGTTTTGT AGTTGTGGCC ACAGATCAAG GAAGTCGAAC
  AGTTGCCAAG GGTGTGTTGA GCACTGTCAT AGATAAGTGA AAGCGATGGC CAGAGGAGAA
  K
  TGGGTACAGG AGAGGAACAC GGGGTTTCTT CTCTGCAGCC ATCTTTATAT ATATCTGGTG
  GTCAGATATA AAAAGACATG AAGTGCGCGT CTCTCCTTCA GAGGTGATGA GGAAAACATC
  CTGGTGCTGC ACTTTCGAGG GTCTTTAGGA CTAGAGAAAA CCACCATCTT CAAGCTACTG
  GTTTCTCATC CTTTCCTGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147117547	ENSMUSSNP857497	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50035579					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100691631 () rs orientation: forward

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	705 bp distal