rs50033652 SNP Detail

Summary

• ID
  rs50033652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:84124993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTTGTGC AGGGTCTCTG
  GGGCACCTCT CTTGGGTTAT GTGGTGGGCA CAGCTCTCGT GCAGGTGTGC ACAGAGGCAG
  CTCTGACTGT CACTCTTCCT ATACCATGTC ACCTTCTGTG TGGGCTAGGA GGAAACTAGC
  CCGCTTCTAC CTTTGCCCTG GTGGTTTAAG GGCAGCTTTA AAGCCAACAT TGTTCTGCAA
  R
  ATGCTCCTTA AGTGACCCTC GGAAGAACAA TTGGAACTCA GTGGTAAAAA CCATGGTGCC
  GACAGCAATG GCAGTCATAA TTACCGTCAC ACCACTTACC AAGTGCTGTC TGGTGCCAGA
  TACTCCTCTT GTTCATCTTC TCATTTAATT CTCAGAGTGA CTGCTCAGCA TATTGTTATT
  CCCTGTCTCT ATGAGGACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60905063	NES15952156	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50033652					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60905063	NES15952156	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84124993 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dysf	dysferlin			Intron
				Noncoding-Transcript-Variant
Rr368107	regulatory region 368107			86 bp downstream
Rr633000	regulatory region 633000			1130 bp distal
Rr633001	regulatory region 633001			52 bp distal
Rr633002	regulatory region 633002			555 bp proximal
Rr633003	regulatory region 633003			622 bp proximal