rs50031871 SNP Detail

Summary

• ID
  rs50031871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33075155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTTACTC TCAAAGAAAT
  CACATTGTTT CATTGGAGAG GATAATTGTT ACTCCCAAAG AAATCACATT GTTTCGTCTG
  GAGGTTCTGA TACCCTTCCC AGCCCTACAG TGTTTTCTAT TTGGAATCAT TGTCCCTCCC
  ACCACCCCAC CCTAGATAGT GACTCAAGTG AAATCAACCT CCAAATAGTC TCTGGAAGCA
  R
  GAAGACATAC ATCAGGGACC ACAGGCGCAT CATCTCAATC CATGCGCTGT TTGCCCACTT
  TCCCCTCCCC CCATGCCTGT ATTCTTTCTA AGAAGGCATC CCTTTACTAT TTCTGGTGTA
  AACTTTCTTC ACTGAGAGTA TTTTTTCCCC TCAAGGTTTT TCAGGAAAGC ATGGGGAGTC
  ATAGTCACCA TAGTAAATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60876017	NES15978181	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss321780510	CHEV_6_33048220	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50031871					SNP	A	A	A	A	A	A	G	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60876017	NES15978181	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33075155 () rs orientation: forward

Symbol	Name	Function Class
Rr628170	regulatory region 628170	726 bp proximal