rs50029890 SNP Detail

Summary

• ID
  rs50029890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:112364663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTTCTG TCCTGCTAAT
  GACAGACAGG AGTCACCAGG GCTGTGACAC CAGTGGTAAT GAGCAAGCAA GAGGGGATGG
  AGATTTGGGC AGCTGTGCTG TGGGATTCGC TGCATCTGGG AGTGGGAGAG AAGAGTCCTG
  GGGGTTTTCA GGCTTTTGTG CTGCTGCAGA AGAGAGTGGT CACTGTCACC TGGAGAAAGA
  R
  GGGGAGAAAG AACCAGCAGA CATGGACAGG CCACAGTAGA CAGGAAGATG TCCATGGGGT
  AGCTGTGGCT TTTTGCCCCA TGCCCATTGT CCCAAGGCAG ATAATAGAGA GACTGTGGGC
  TGTCATGGGC TGTCTTTCCA GAATAAAGAA AAAAGGGGGG AAGGCAGGTG ATCAGGACAG
  AGATGCTGGT GAAAGGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60929806	NES16197555	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50029890					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60929806	NES16197555	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112364663 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636339	regulatory region 636339			306 bp proximal
Rr636340	regulatory region 636340			1899 bp proximal
Ssu2	ssu-2 homolog			Intron
				Noncoding-Transcript-Variant
Tssr62400	transcription start site region 62400			311 bp downstream