rs50023628 SNP Detail

Summary

• ID
  rs50023628
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153363680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTCTGCT GCTGCAAGGA
  TTGCTGGTCC GGAACACACC CTCTCTGGTC TTCTGTCCCA CTCCTCTCTA TACAGTTTTC
  TGGTACTATC GCCCACAGCA GGCTCTTGAA CTAGAATCCT TTGGAAGAAA TCCAGATTGA
  AATAGAGACA GCATGGCTTT CTAGCAATCC ACTCTGTAAC ACAAGAACTA GTTCATTTCT
  R
  TCCAGAGCTG ACCCCAAAGC AACCTTAGGG GGAAAGCCTC ATTTTAATAC GGCTCTGAAG
  CTCTGGCTGA TTCCTGGTGG CTCTCAGCGA TGAAAAGTGA CACTACTCTG TCACCTGCTC
  TGTGTGCTAG GGACCACTAG TGCCACTTCT CTCTTAGAAA GGGCCAAAGG CTAATGTCAT
  GAGAAAGCAG GCCAAGTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136110525	ENSMUSSNP5827667	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50023628					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153363680 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587719	regulatory region 587719			129 bp proximal
Rr587720	regulatory region 587720			529 bp proximal
Rr587721	regulatory region 587721			1628 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant