rs50021275 SNP Detail

Summary

• ID
  rs50021275
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125102239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTATTTGG GTTATTTTTA
  CTTTAATTCC ACTTCTCCCT TTGTTTAATG TCACATAATT CTGACCTTTA TTACCACACT
  TATCAACTTG CTCACCTGCT CAGCTTCTGT TTCCAGTATA TTTTCCTCAA TATTATCATG
  ATATTGTTTT GTCCAAGGTT TCCCTGAAAA GTTCATTACA GTTAAGCAAT GCATGTAAAA
  K
  AATATAATCT TTGAAATTAG CACATGGCAA TTCTGACAGT GTGTATATAT TGATGCTGTA
  GCAAACTATA TAAAAACCTA GAATATATAT ATATGAATAT ATATACATAT ATATATATAT
  ATATATATAT ATAAGTGTTT CTGCTCTTAT GAACAATGCA ATATTAAAAA TTACAATGAA
  GTGTCAAATA TACCTCCATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135806152	ENSMUSSNP5795488	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
ss320935455	CHEV_3_125011508	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50021275					SNP	G	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125102239 () rs orientation: forward

Symbol	Name	Function Class
Rr584607	regulatory region 584607	1532 bp distal