rs50021195 SNP Detail

Summary

• ID
  rs50021195
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117232180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCTAGGA TTTTTGAGAC
  TGTCCGGGAC AAAGCAAAAG AGAATAGCAA TAACTCCAGT ACATAGGGGC ACATATATCT
  TTTCATTTAC ATGGAAATTA TGTGAAACCT TTTCAAATCC GTGCTTCTCC ATCCATCAAT
  AACTTAGCTT CAGTAATCAG AATCAAATTT TAATTTCTTT TAAAAAATGA ATAACAGTCA
  Y
  GATTCATATA TATATATATA TATATATATT CTCTCCAAAA TACATTTATA TGTATTCTCT
  CCAAAAAAGA TGATGCTGTC TCTTTAATTG TGCTTGGAGC CGAAAAGGTT GTCATGGAGA
  TGGGAATCTG TGCTAGGCTG CTCCACTTCC CTGGCCTTGT TCTGAGCCTG AAGTGGAAGG
  TTCTATTGTT AGGGTGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135690339	ENSMUSSNP4790565	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320899521	CHEV_3_117141449	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50021195					SNP	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117232180 () rs orientation: forward

Symbol	Name	Function Class
Rr583844	regulatory region 583844	28 bp proximal
Rr583845	regulatory region 583845	405 bp proximal
Rr583846	regulatory region 583846	1726 bp proximal