rs50016038 SNP Detail

Summary

• ID
  rs50016038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135797667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGGAACCT CTACAAGGAC
  TTGTTCGTTT GCTGCAGCAA GGAAGTCAGA GAGCCCAAGC TCTGGAGCGA CAGCCCTGGA
  CTGCACCTCA TTCTCCGCCT CTGTCCTTTA ATGCTCGTGA GACTGGGTAG TCTGCTTGAC
  CCCTCTGAGT CTCACATTCC CCGTGTGGGA AGTGAGGCTG GCCCTGAGAG GGATATTTGC
  Y
  CCAAATTTAG AGGTTGAGGC AGACAGTCTT CTGGCACAAG AGTCTGCTCA GTTCAGATTC
  ACCACAGCCC AACAGTGAGG CCAGGCTCCT CCAGCCAGGT GCCTGGTTTC TCCCTCACTC
  TCCATCTGGA ATGTTCGCCC TTTCTGGAAT CATAGCCTCT AAAACATTTA GACTCCATGT
  CTCCTCGCCT CCCGTTGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147557403	ENSMUSSNP4370006	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50016038					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135797667 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15093	CpG island 15093	73 bp distal
Cpgi15094	CpG island 15094	911 bp proximal
Rr367750	regulatory region 367750	1129 bp upstream
Rr602257	regulatory region 602257	within coordinates
Rr602258	regulatory region 602258	223 bp distal
Rr602259	regulatory region 602259	397 bp proximal
Rr602260	regulatory region 602260	1331 bp proximal