rs50015359 SNP Detail

Summary

• ID
  rs50015359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145122187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGTTAGC AGGCAGGTAG
  TGCTGCCACG GGTCACTGAT TGTTTTTTGT TTGTTTGTTT GTTTGTTTGT TTCTTCTTTT
  GTACTGGTTG CGAACATAAT GAATTTATTT GATTTTTATA TGTGGGCCAC ATGTAAACAA
  AGGATGCAAC CAGAAATTAT CATTTTCCCT CTAGCAAACA CTTGAGATTA TTACCAGGAA
  R
  CATTTCTAAG AACAATGAAG TATTTACTTT GTGTGCAGTA TTTCTCATTG AGACAAGATA
  TTGTGCATTT GAGTGCAGCC TCACTTATGA TTGGCTCCTG GTTTGTTTGT TTTTTTTTCT
  TTAGCATAAG ATTAAGACAT ACAAGGCATG ATAGTAATAC AAGAAAGAAA GGATCATGTG
  GCTGGCTATT ATCTCCTCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136038398	ENSMUSSNP5451653	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321008284	CHEV_3_145079396	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50015359					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145122187 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr586779	regulatory region 586779			1482 bp proximal
Rr586780	regulatory region 586780			1602 bp proximal