rs50015276 SNP Detail

Summary

• ID
  rs50015276
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102387440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGATAGG TGAAGCAGGT
  CTGTGAGCTT CTTTTCTTTT CTTATTTTGT CATAACATAA TTGATGGATA TTGCAAGAGA
  TCCTTTTCCA TTAATACCAG GATATCCTTA CCCAAGTCAT TTTAACCTGG AGAAAACTCA
  GTGCCTGCCA GACACCGTCA ACCTGGGGTT GTGCCATATA GAGTGAAGAC ACCTATTTCT
  M
  TCACCCTTCA GCCTTGGGAG CCAAATACCT GCTTTGATGA GGTCATCTCC TCACCACTGT
  GGGAGGCGGA TGTGGAGAAA ACAAAGAAAT CAGCTTTAAC CCTACAGGCT TGCTGTTCTC
  ATTGCTGCCC TCAGAGGTTC TGGCTGTCTC AGAGGGCTGG GTTAGTGGTT TGGCAGCAAG
  TGTCTACATA AGTAGACGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147115598	ENSMUSSNP6613431	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss320438834	CHEV_2_102397252	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50015276					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102387440 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pamr1	peptidase domain containing associated with muscle regeneration 1			Intron
				Noncoding-Transcript-Variant
Rr561705	regulatory region 561705			1843 bp proximal