rs50011666 SNP Detail

Summary

• ID
  rs50011666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127645223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGAAGGCT CCACCCTAGG
  TAATCTCCTT CTTAGTGGTA GCAAGGTCAA AGTCTGGATC AGCCTGCTTC AGGGCTGAGG
  GAGGCTACAG CCACCCAAGC ACCTGCAGTT TAGAAAGGCT GTTAGTAACA GCTCTCCCTG
  TGTTGGAAGC GGAGAGTTCC CTGTTGTATA AAACTTTACA AGGAAGGTTC TGTTTGTTCT
  Y
  TGAAAGGATT ACTTCATGAT ACTTCACCAC AGTTTTACCT TCTATCTTTA CAGGACAACT
  TGATTAACCC CCTTCCCACA GCTAGACTGT AAACAATGCA GAACCATGCT ATTCTTGCTT
  ATTATTCTAA CAGTACATTA GTGCCCCACA CTTGCTCATG AAGGCTGATT GTGTTTAGAA
  TGAAGCAAGA CTAGAAACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135873089	ENSMUSSNP5211947	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320957498	CHEV_3_127554492	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50011666					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127645223 () rs orientation: forward

Symbol	Name	Function Class
Rr584881	regulatory region 584881	1100 bp distal
Rr584882	regulatory region 584882	1135 bp distal
Rr584883	regulatory region 584883	within coordinates
Rr584884	regulatory region 584884	1193 bp proximal
Rr584885	regulatory region 584885	1830 bp proximal
Rr584886	regulatory region 584886	1938 bp proximal