rs50007158 SNP Detail

Summary

• ID
  rs50007158
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152099006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGTCTTT TTGAATAATA
  GAGTATTCAC TGCTGTTTGC TTGATCATGT GATGTCAAAA GCTCAACTAT ATGCAACTAC
  AAACATGCAG GTGACTGAGG GACAGCATTC ATGGTGACTT TGCAATGTTG TTAAAACTCA
  TTCAATAAAA ATAATTCTAA AATGTATAAA CTGAATGTTG AATTTATTTG ATAGACTTTT
  T
  AAAAAAGGTG TAAAGTCTGT TAGTATTAAT GCCTTTCATT ATATCTTATT TGAAAGCATA
  AGCTAGGAAG TTATTTGCTA TAATAACGTT TATTAAACTG TTTCAGAATG GCAGCATGGT
  GGTTGGCATC TGTCTCCCAG TACCTGGTAG GCTTGGCTGG AGGAACCTAA GTTTGTGGGC
  TGTAGAACAA GACCGTCCCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss136102869	ENSMUSSNP5082464	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50007158					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152099006 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13949	CpG island 13949	1198 bp proximal
Cpgi13950	CpG island 13950	1926 bp proximal
Gm43857	predicted gene 43857	within coordinates
Gm66519	predicted gene, 66519	within coordinates
Rr587540	regulatory region 587540	357 bp proximal
Rr587541	regulatory region 587541	444 bp proximal
Rr587542	regulatory region 587542	1298 bp proximal
Usp33	ubiquitin specific peptidase 33	mRNA-UTR