rs50006716 SNP Detail

Summary

• ID
  rs50006716
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152724546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAAATTT GGATAACAAC
  ACATGGGCTG AATGTTTCTA AATTCTTAAT TTATACAACG TCCTGGTTAG GTTTGTTTGT
  TTTGTTTTTG TCAAGCTCAA ATTACCTGGG CACCTTAACT GAGAAAAAGT GCCTACATCA
  GACTTCCTGT ATGCCAGTCG GTAGTTCATT TTATTAATTA ATATTGATGA GGATGGGCTC
  R
  ATTCATGTGG TAGGGGTAAC AGGGTGGGGA CAGATGTGCA ATCTCTGGCC AGATGGTTCC
  GGGCTTTGTG ACAAAGCAGT CTGAGGAAGC TATGGAGAGA GAGCAAGCCA CCAAGCCATA
  TTCCTGCATG GCCTCTGCTT TTAGTTCCAT CTTCCTCCGG TTCCTGCCTT GAGTTCCAGC
  CCTGCCCTCC CTTTATGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136105683	ENSMUSSNP4730385	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss321029599	CHEV_3_152681873	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50006716					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152724546 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587644	regulatory region 587644	521 bp distal