rs50005597 SNP Detail

Summary

• ID
  rs50005597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:43508257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTTCAC CAATAGGGGA
  TTTCAGAGGA GCCACTAACT ACACAGAAAC TAAGAGTAAA GAGGGGATAG GCCCTATTCT
  TAGTTAGAGC ATTAAACAGA AGAGAATGTT CAGGAATATT TTATAAGTTG TGCATGTATA
  AATTTTTAGA AGCATGGATC CCATTTCTCT CCAGAAAGAG AAGAATGCCT TGAGTACAAA
  Y
  CCCACAGGAA TAACTAGGAA TTTGAAGGAT AGCTCTTAAT TCACCTCCTC CAAATATTTT
  CAGCACCGTG AGACATTGAA CTGACTTTTT TCATCTTTGA CATTTCCAGA CCAATAACTC
  ACTTTTTAAA AGGATGCATT CAGTGTATAT TGATCATATA CATCCATTTC CTTCCTCCTA
  CCAACTCCCC TATGTATGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss52393748	NES15382213	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	C	C		C	T	C	C
ss137670047	ENSMUSSNP5525475	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss324020012	CHEV_12_44562461	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs50005597					SNP	C	C	T	T	T	T	T	C	T	C	C	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52393748	NES15382213	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:43508257 () rs orientation: forward

Symbol	Name	Function Class
Tssr113357	transcription start site region 113357	1304 bp downstream