rs50005276 SNP Detail

Summary

• ID
  rs50005276
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121396110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCTGGG AAGGGCGGGG
  AACAGCAAGC CGCTGACTCC CTGTAAGCTG GCGCAGACAG CTCTGCTTCC TTTTCTGTTG
  GATTTGAAAT GAAAAAAATC CAATTCTGGG AGAACACTGG GAACGAGGTC ACTTGGTTCC
  ATTTCTACAC ATTACGCCTC ACTGAGCAGC TCCAACCGTT CCACACCCTA CCCTGGCATT
  K
  TACTCAGGCA AGCCCTCTCT ACCCGTGAGC TACACCCCAG CCCTGTGCTG ACAGTTCAGT
  CTCACATCAG TGCTTACATG CAAAGGAAGA GGATGAGCTG TGTTGGCCCG GGGATCAAAC
  ATGAGTCTGT TTATCAACTA AAACGGGCTA TTGGAGTCAA ATTAGAATTT CCGATTAACA
  ACGGATAATT TATTCTCACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135724871	ENSMUSSNP1408734	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50005276					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121396110 () rs orientation: forward

Symbol	Name	Function Class
Gm33485	predicted gene, 33485	within coordinates
Gm65954	predicted gene, 65954	939 bp downstream
Rr584124	regulatory region 584124	1725 bp distal
Rr584125	regulatory region 584125	within coordinates