rs50001520 SNP Detail

Summary

• ID
  rs50001520
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8637504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGAGAC AACATCATAC
  AATATTTAAG CCTTTCTGAG AAGTATTTCT CAATTGCAAA TATATTTCCT TGGGAAAGAT
  CATGCAACAG TTTTGTTTGA ACTTAGTCCA TAAAAAGACA CAGACACACA CACACACACA
  CCTCAACTTC TACGGCCACG CTGTCATTAC ATTAATTGTA AATGTAATGA GAAGAAAGGC
  T
  GTCGGTTGTA GATTTATTTA AAGCAATGCC GGATGCTGTC TAGCTCTAAG TCCCTCGCAC
  AGAGTCAGCA CAGCCCACGG AGCAGCTCCA GCTCACACTT ACTCATTCTT TCATAGTCTC
  AAAATCATGG TTAGTATTCT CCAAAAGTTA CATACGGCAG CTGGGTGACA ACGCTCAGGG
  GTGGAAGGCA GGTTAGTAGC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146766613	ENSMUSSNP1823604	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323245269	CHEV_10_8481538	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50001520					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8637504 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	within coordinates
Rr427375	regulatory region 427375	290 bp distal
Rr427376	regulatory region 427376	294 bp proximal
Rr427377	regulatory region 427377	1764 bp proximal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	645 bp downstream
Tssr96639	transcription start site region 96639	1114 bp upstream
Tssr96640	transcription start site region 96640	479 bp downstream
Tssr96641	transcription start site region 96641	529 bp downstream
Tssr96642	transcription start site region 96642	548 bp downstream
Tssr96643	transcription start site region 96643	609 bp downstream
Tssr96644	transcription start site region 96644	711 bp downstream
Tssr96645	transcription start site region 96645	839 bp downstream