rs49996997 SNP Detail

Summary

• ID
  rs49996997
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14295006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATCTGTC TGCCTCTGCC
  TCCTACTAGT GCTGGGATTA AAGGAATGGA CCACCACACC TAGCTTTGAG CAAAAGTTTG
  AATCTTTTGA TTGTAAATGG AAGAAAATAT CTAATAAAAA AGTTGAAAAA AAAGTTTGAA
  TCTTCCTTAA GCATAATTTA TGCAAAGGCC CACTGCTTTG TTCTTGGAAT TCAACACCTG
  S
  GGCAATGGGC CTTCCTTTCA CTCCTTTCCT CTTCCTCTTG CATTTCCTGA TTGCTGAGTC
  ATCTAAGGAT AGCCATTGCA TCAGACTGTG ATTTCAGACT CGTGCCAACT CGGAAAAGAA
  ACAATCACCG CCTGAGTTAG AATGAAGATG AAACGCACTC CCAGTCTCCC TGTGTATTCC
  CTCTTTCTGA GAACTCCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62078198	NES17156060	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49996997					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62078198	NES17156060	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14295006 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6157	CpG island 6157	1329 bp proximal
Pdhb	pyruvate dehydrogenase (lipoamide) beta	1742 bp upstream
Rr389295	regulatory region 389295	within coordinates
Rr487854	regulatory region 487854	1423 bp distal
Rr487855	regulatory region 487855	within coordinates
Rr487856	regulatory region 487856	801 bp proximal
Rr487857	regulatory region 487857	920 bp proximal
Rr487858	regulatory region 487858	1252 bp proximal
Tssr127398	transcription start site region 127398	1790 bp upstream
Tssr127399	transcription start site region 127399	1764 bp upstream