rs49996061 SNP Detail

Summary

• ID
  rs49996061
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34533936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCTCCTG CATGCCTTTG
  TCATTTGAAT GCATGAATTC AAGTTCTGTG AGCACCACCT TTCCACTAAG GATGTGTGAT
  TCTCCAGCAG TCATGAGTTC GTAACTCTAA GGGAGTACGC GCTGAGGTCA CTAGCTGATG
  GTGTATTTCA GCATATGCAC AAACACAAGG AACTCCAGCA CAACCCTCGT GTGCAAGGTT
  R
  GAAGGAAGGC TCACCAGTGT GGCTTGCTCG TGCGAAGAAA ATCGCACTGC GGTGAAGCAT
  TTGGAAGATT GTCTGTTTCC CCATCTCGCT CTTTGGAGTC TCTATTTTTG TTGTCCTCAA
  AAATATTCCT CCTTCATTCA ATGAAGGGTT TTGGTTTTAT CTTGTGCCAG GTACTGAGTT
  ATTGTAAGCA TGGCGGGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60386317	NES15888835	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49996061					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60386317	NES15888835	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34533936 () rs orientation: forward

Symbol	Name	Function Class
Gm42695	predicted gene 42695	1641 bp downstream
Rr575139	regulatory region 575139	1451 bp proximal