rs49995001 SNP Detail

Summary

• ID
  rs49995001
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:14296630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTACTA GCTGCCGAAT
  GACAACACAG AAGCGCCGCA GAGCCCGTCT GACGCAGCCA ATAGTAGGGC GTGACACCTT
  TACGTCCCAC CTCTGTTCGG CAAAGCCAAT AGAATGGTAA CTGAGAGTCC CGTCTTCCTG
  AGGAAGCCAA TAGCAAGGCG CTATTTCATA GGCCCCGCCC CCAGGCTTTG GCAGAGCGCG
  M
  CCTCTGGGCC CCGCCTCTGC ATGCGTAGCC AACGGCTAGT TTCGACGCCT GCGAGCCCCG
  CCCACCTAGC GAGTCGCGGT CCAGCAGAGG TGACGTGAGG CTGCTGTTCC TCTCTGACCC
  GGTGCACTGG AGATAACTTT GCAGACCGCT TGCAGAGGCT GTCATGCACC TAACACGCCC
  TACACTCAGA CTTGACTGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62078225	NES17151090	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49995001					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62078225	NES17151090	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14296630 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6157	CpG island 6157	within coordinates
Pdhb	pyruvate dehydrogenase (lipoamide) beta	Intron
Rr389295	regulatory region 389295	within coordinates
Rr487855	regulatory region 487855	1591 bp distal
Rr487856	regulatory region 487856	802 bp distal
Rr487857	regulatory region 487857	683 bp distal
Rr487858	regulatory region 487858	within coordinates
Tssr127398	transcription start site region 127398	166 bp upstream
Tssr127399	transcription start site region 127399	140 bp upstream