rs49994892 SNP Detail

Summary

• ID
  rs49994892
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172318960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGAGAACC GATTAATTGA
  TGGCCCACTG CAGTATCGTT CTCCTTGGTA CTTGAGAAGT ACAGCCCTGG GTAATACAGT
  TAAAGCCAGA GACCCTGACA TGAGGAAGGC CCACCAGGAA GTCTCACCTC CCTTTCTGAC
  CTCCCTGGAC CCTCCCGCAC ATACAGTTTC TCAGCAGAAG GAATCAGGGT GGGTAGGCTT
  R
  CCTGCCATGC CTCGTGAAAC AGGGCTGACT TGGAAAAGCG AGTGGCCTCT GGAACAGGAT
  GGGCTTTTAT CACACATCCC AATTCGGGTC CTTAAGGTCC TGTAGCAACT TGGCCCATGA
  CTACAAAGGG CAGAACCAGG AAGAGGTGTA GAAAGGCCCT GAGGGTTCTG GGAATTCCGG
  AATGGGCTGA GGACACCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146193649	ENSMUSSNP6344676	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49994892					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172318960 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1051	CpG island 1051			688 bp distal
Igsf9	immunoglobulin superfamily, member 9			Intron
				Noncoding-Transcript-Variant
Rr423588	regulatory region 423588			1685 bp distal
Rr423589	regulatory region 423589			805 bp distal
Rr423590	regulatory region 423590			626 bp distal
Tssr10205	transcription start site region 10205			787 bp upstream