rs49994157 SNP Detail

Summary

• ID
  rs49994157
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:31730357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAACTCG GGACCTCTGG
  AAGAACAGCC AGTTCTTCAA GCCCTCTGGT ATTATTTTTC AACTCGGCTT TCCTCCCAAA
  TTTATAACTG CTGAGGCTGT CTTTACAGAA TTCAGAAACA AGTCTCACCT GCCCCCGTGA
  GCTCCAGGCT CTTACTCATG TGGGAATCAA ACACTTTCCA AATCAGAACT TAAGCTCCCT
  Y
  CTTTTGCTCT GACCCTGTAC CCTGACAACC TATAAAGTGG CAGGCACCAA AGACTTCTCC
  AGTTAAACAC TCAACTGCAG AAAGAAGAGT CATTTTCCAA GTCTGAAACT TTGTTGGCCA
  ATGGCATTCC CCAAAAGGCA CAAATTGAGG AACGTTCCTA ATCTTCACAT GTACCAAAAC
  TAAACGGGAA GGGGAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60257944	NES15756512	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49994157					SNP	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60257944	NES15756512	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31730357 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm50103	predicted gene, 50103			621 bp upstream
Rr370216	regulatory region 370216			894 bp upstream
Rr525507	regulatory region 525507			243 bp distal
Rr525508	regulatory region 525508			131 bp proximal
Rr525509	regulatory region 525509			980 bp proximal
Rr525510	regulatory region 525510			1358 bp proximal
Tssr147287	transcription start site region 147287			834 bp downstream
Tssr147288	transcription start site region 147288			870 bp downstream
Wdr4	WD repeat domain 4			Intron
				Noncoding-Transcript-Variant