rs49992391 SNP Detail

Summary

• ID
  rs49992391
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAATTT GCTTCCAGTC
  CAGCTTAGTG AATGGGACAA ACTTATTGGT GTTGTCTGTA GGGACATGGG TGGCTTGGGC
  AATTGTATCA TCAAAAAGCC TACCCCAGCA TGGTGACAAG TGCTCAAAGC TAGTGACATC
  GCTGGTGTCC CCATTAGTTG ACAGTCCACC TCCAAGCAGC AGACAGGACG GTTTGCAGGG
  A
  TGAAGCAGGA GGGAGGGATG GAGTGTTGGA ACGTCAGGGG AGGGTCTAAT GACCCCACAC
  ACAGGGACTG GTACAGGCAC GATTTTTTGA AGGCCTCCTG TAGATAATCG AAGCTGTTGG
  AAAGAAAGGG CCACACAAGC CCAGGGAACA GAATTCCACG CCACACAGAT CTTCTCTGTG
  GGTTGGGCTC TGCTCCAAGG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147553241	ENSMUSSNP6185977	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49992391					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623412 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr602183	regulatory region 602183	697 bp distal
Rr602184	regulatory region 602184	403 bp distal
Rr602185	regulatory region 602185	within coordinates
Rr602186	regulatory region 602186	771 bp proximal
Rr602187	regulatory region 602187	894 bp proximal
Rr602188	regulatory region 602188	922 bp proximal
Tssr39650	transcription start site region 39650	906 bp downstream
Tssr39651	transcription start site region 39651	705 bp downstream
Tssr39652	transcription start site region 39652	625 bp downstream