rs49992004 SNP Detail

Summary

• ID
  rs49992004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141686872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTC ATGAGTGCTC TAAACAACAA
  Y
  GCACAGAGCA TAAAGTAGTT CCTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61089566	NES16605950	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T		C
ss320997326	CHEV_3_141644075	CHEVERUD	SCREENING_POP	f	SNP		T				C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49992004					SNP	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61089566	NES16605950	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141686872 () rs orientation: forward

Symbol	Name	Function Class
Bmpr1b	bone morphogenetic protein receptor, type 1B	Intron
Rr586376	regulatory region 586376	578 bp proximal
Rr586377	regulatory region 586377	1010 bp proximal
Rr586378	regulatory region 586378	1143 bp proximal
Tssr35923	transcription start site region 35923	1095 bp downstream
Tssr35924	transcription start site region 35924	1113 bp downstream