rs49991900 SNP Detail

Summary

• ID
  rs49991900
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58976119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTGCTAG GTGATTTTAT
  CATTCTACAA GCATCACAGA GTACACTTGT TATAAATGCA AATGGTATAG CCTGCTACAT
  CCTAGATTAG ACTAATGGTA CAGTTATATA CCTGTTATAA GTGATCTGTG GCTGACTAAA
  ACATGCTAGC AGATGTCTAT AGTTGTACTT TCTGGTGCTA AATAATATAT GCATGTATGC
  M
  ATGAAATTTT TGCATGTGAG TGAAGTTTCT GAGGCAAGTT CTTGCTGGTC TTGCACTCAC
  ATAGACCATG CTCGCTTCCT CTGCCTCTCG AGGGCTGGGG TTCCAGCCAT GCACTGTAAT
  GCCATCTCTT AGAGAGCATT CAAGATAGCA CAGAGGCCCT GTGCTGACAG TTTATTACTG
  ATATTCAACC CAGGTTGTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60415500	NES15911069	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49991900					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415500	NES15911069	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58976119 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Med12l	mediator complex subunit 12-like			Intron
				Noncoding-Transcript-Variant
Rr577305	regulatory region 577305			601 bp proximal