rs49990831 SNP Detail

Summary

• ID
  rs49990831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124379600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCTATAG AACATACAGA
  AGGCAGTTCC AAAAGACTAA GTTCCTACAT CCCTACATCA AAAAACCCTG TAGACATTTC
  ATTTTAGTGA TTTATTGAAA TTCCTGGAGG CTCTAGAACA ACAGGAAGAA ATAATACCCA
  AAGAGAGTTA AGGTGAAGAA TAGTCAAATG TGGGCTGAAA TCCTTGAAAT AGAGGTCTGA
  Y
  GTCCTCTGCT GGACGATGTG GGCACATGCC CTCACATGTG GCCATAATTA CCGTCACATC
  ACATACACAA ATACTCATGG TTTGAAATAA ATTAAGTATT TTAAAAGTAA CTCATCAATG
  GAAGCATAAT ATAAATTTTC CCAGTCCTTC CCTTTGCCTT GATTTGTATT TCTTACCCTC
  TGCCTTACTT GCACTGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135790705	ENSMUSSNP3179992	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320929393	CHEV_3_124288869	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49990831					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124379600 () rs orientation: forward

Symbol	Name	Function Class
Rr584593	regulatory region 584593	within coordinates
Rr584594	regulatory region 584594	1664 bp proximal
Rr584595	regulatory region 584595	1776 bp proximal