rs49988602 SNP Detail

Summary

• ID
  rs49988602
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:5156454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATAAAT CACACCCACT
  CCTATTACAT ACAGTTAAGT CCTCAGGGAA TAAAGTTATA ACTCATTACA TTTTGATTTC
  CTTTGATCAA ATACCATACA TAACACCTGG ATATTGTAAT TTCAAGTAAC AGTTGTGACA
  CAAACTAGGA TAATGCTTAA AAACACAAGA GTTGTAATAT GGTTGCCATT AGTCCTTATC
  R
  TTTATGGTGT AGGAAAATTG TGAATGGTCT TTGAGGCATT TGCTAGAATT CCATTAACAA
  AAATTAATTA TAGATCAAGA AAACATGTTT TCAAAGAAAC ACCTGGAAGT AATCCACAAA
  CATATATGTC TGGGATCAGA ACATAATTGC CCCATTCTAA CCTGTATAAC AGCCCCCCCT
  TTTTATTTTA GATGTAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60366972	NES15869430	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49988602					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60366972	NES15869430	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5156454 () rs orientation: forward

Symbol	Name	Function Class
Gm17308	predicted gene, 17308	within coordinates
Rr573166	regulatory region 573166	1442 bp distal
Rr573167	regulatory region 573167	1108 bp distal
Rr573168	regulatory region 573168	824 bp distal
Tssr28264	transcription start site region 28264	1079 bp downstream