rs49988200 SNP Detail

Summary

• ID
  rs49988200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121313096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ATCAATGGGA GGAGAGGCCC TTGGTTCTGT GAATGCTCTA
  TGCCCCAGTG TAGAGGAATG CCGGGTGGTG AGGTGGAAGT GGATGGGTAG GTGGGTGGGG
  R
  AGGAGCACTT TCATAGAAGC AGGGGCAGTG GGGACCGGAT AGGGCGCTTG CAGAGGGGAA
  ACTGGGAAAT GTAAATAAAT AAAATATAGT AATAAAATAA A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147387567	ENSMUSSNP6982677	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49988200					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121313096 () rs orientation: forward

Symbol	Name	Function Class
Gm14017	predicted gene 14017	1101 bp downstream
Gm75774	predicted gene, 75774	within coordinates
Rr563835	regulatory region 563835	1902 bp distal
Rr563836	regulatory region 563836	1710 bp distal