rs49987951 SNP Detail

Summary

• ID
  rs49987951
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48173231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT CCAGATGTTT GCTACATCTG
  C
  CAGTCCAACG AGGCTCTTCT TTTGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145710385	ENSMUSSNP6004218	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325406944	CHEV_17_47999255	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49987951					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48173231 () rs orientation: forward

Symbol	Name	Function Class
Rr392692	regulatory region 392692	within coordinates
Rr528160	regulatory region 528160	797 bp proximal
Tssr145062	transcription start site region 145062	19 bp downstream