rs49987586 SNP Detail

Summary

• ID
  rs49987586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121616929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGGCTGAG TGGTTAAAAT GCACTTGCTG TTTATACAGA
  GGACCAGGAT TCAGCTCCCA GCACCATCTA TAACTCCAAT TCCAGGGGAT CTGATACCCT
  Y
  TTCTGGCCTC TATTGACACT ACACACAGGA GGTGCACACA CAAACAAGCA GGCAAAAAAA
  AAAAAAAAAC TCAAAAATAT GAGATGGATA AAAGTCAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320906110	CHEV_3_121526198	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49987586					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121616929 () rs orientation: forward

Symbol	Name	Function Class
Gm42776	predicted gene 42776	164 bp downstream
Rr584178	regulatory region 584178	1258 bp distal
Tssr31460	transcription start site region 31460	648 bp upstream