rs49985675 SNP Detail

Summary

• ID
  rs49985675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:92196470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTCATTG TGGATATTGC
  TTGTTTCTTT CATGTGTATT TTTCCTCAAA TATATTGAAA GCAGAAATAA ATACTAAAAA
  GGTAAGTGGG AAAGATTAAG AAGTAAGCAA ATCGCTGAGC ATGGGACTGG CCCCTCAAGC
  CACCTCCTCT TCCAGATGTT TGTCCCCGGG TACACCCACT TGCTCATCTG AGATTTAGAT
  Y
  CACTATCTTT CACTGGTCCA CTCAGCAAAC CAAGCTGTGG GGAGGCATCC ATCCCCCGGG
  CTCACAAGCC TTCTGCCTGA AGAACAAGTT TACCAGAGCT CAAAGTCCAA AGTCCAAGTC
  CAGGATAATC AGAGGGCAGT GAAGAGCCAT GCTAGCCACC AGAGGGTGCC ATGTAACCAC
  TTAAGACCCA TACAAATGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60911646	NES16220194	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49985675					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60911646	NES16220194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:92196470 () rs orientation: forward

Symbol	Name	Function Class
Rr634622	regulatory region 634622	within coordinates
Rr634623	regulatory region 634623	152 bp proximal
Rr634624	regulatory region 634624	376 bp proximal