rs49981478 SNP Detail

Summary

• ID
  rs49981478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141168531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGCAGT GTGTAGCTGC
  CAGAGGCATT GCTGGAGCTG CGCTGCTCAC AGGTGCTTTT AGGGCCCCTG CCCCTATACT
  CTCTTCTTTC CTCTTCATAG CCACACATCT TTCTCAAACC ATGCTCCTGC CCTCTTTAGG
  CTGAATCTCA GCATTGAACT ACTTTCCTTT GCCTTATCGC TGACTGGTGC TTTTAAGGCA
  Y
  TAATTTCATG CGGTATCGAC TGCTGAGGGC TTCAAAGATC CAAGCAAGAC GATGTGATCA
  TTTTAACCTT CCTCATCTGT CCTAGACGTT GAAGATTCCT CCCAGGTGAA CCTTTTTGTC
  AACCAGCCAA CCAATCCTGA CTGAATACCA AGCACGGATA AGGTTTTGTG TTAACAGTGT
  GGGTTGGAAA GATCTGCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61092733	NES16592269	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	C	C	T		C
ss320992362	CHEV_3_141125734	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49981478					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092733	NES16592269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141168531 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13884	CpG island 13884	1870 bp proximal
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	within coordinates
Rr586319	regulatory region 586319	1956 bp proximal
Tssr1065	transcription start site region 1065	1925 bp upstream
Tssr35916	transcription start site region 35916	1805 bp downstream