rs49980603 SNP Detail

Summary

• ID
  rs49980603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130590472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATC GGAGCCAGTG GGCGTTGGTT
  Y
  GTCAGGCGCA GGCATATTAG CAGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135899931	ENSMUSSNP1320448	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320966645	CHEV_3_130499741	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49980603					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130590472 () rs orientation: forward

Symbol	Name	Function Class
Gm36443	predicted gene, 36443	within coordinates
Gm66061	predicted gene, 66061	1424 bp upstream
Rr585211	regulatory region 585211	within coordinates