rs49979451 SNP Detail

Summary

• ID
  rs49979451
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150575144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGCATCG CAGTTATTCC
  TGGTTGCTGA GGGCCTCTGT GCAGGTTGAT CAGTAGGTAA TGCTGGCCGG TTTGGCTCAT
  TCCCCACTGG CTGCACTTGG GACTATCAGG AAGTAGGAGG AAACATAGGA GGATGGACTT
  CAGAGAGAAT GGACAGTTCT CAGATCTTTT TATTTCAGTA TAGAATAAAG TTTACTCAGG
  Y
  CATGGGGAGG GGAGTTAAGA TGGTAGTAGA GGCAGAGAAA GAGAGAGTAG AGAAATAGAG
  GCCGGCCATG AGCACATGGA AGCCATGGGT GGGGGTGTGA GGAAGGAGCA AGGGGACAGA
  GCAGGAGGAA GAAGGGAAGA GCAAGAGAGG AGCAAGAGCT AGACTCTCGA CCATGAATTT
  GAGTGAAGCC GTGCATTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148053839	ENSMUSSNP2262135	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49979451					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150575144 () rs orientation: forward

Symbol	Name	Function Class
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr605318	regulatory region 605318	1541 bp distal
Rr605319	regulatory region 605319	370 bp distal