rs49977552 SNP Detail

Summary

• ID
  rs49977552
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135621953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAGCATCC ACAGGCACAT
  GCACACATGC TTGTGTGCAC ATACCAGGCA TGGTGAAGAA TACTATAATC CCAACACTGG
  GTAGATGGAG ACAGCCAGCC TAGCCTTGCG GGTGAATCCT GGGTTCCAGT GAGAGACCTT
  GCAGCAAAAC TCAAGGTAGA TCTAGGAGGA TACAAGCTGG CATTCAACTG AGCCAGCAAC
  C
  GGCCCCCTCC ACAGTTCTTG CTATGTCTTC ATAGCAAATT CCTCTGTTAG AGGTAATGCT
  GTGTGGAATG GTGTCTTAGC TAGGGTTTCG TTGCTATGAA GAGACACCAT GACCAAGGCA
  ACTCTTACAG CCAAGCATAT TCAAACCACC ACAAATAGCA AACAAGCCTA GCTTCAGGTA
  CCTGCTTGGG TTCCTGCCTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147553152	ENSMUSSNP992232	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs49977552					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135621953 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	752 bp upstream
Rr602181	regulatory region 602181	1493 bp distal
Rr602182	regulatory region 602182	1177 bp distal
Rr602183	regulatory region 602183	349 bp proximal
Rr602184	regulatory region 602184	763 bp proximal
Rr602185	regulatory region 602185	1329 bp proximal
Tssr39650	transcription start site region 39650	538 bp upstream
Tssr39651	transcription start site region 39651	742 bp upstream
Tssr39652	transcription start site region 39652	772 bp upstream