rs49975010 SNP Detail

Summary

• ID
  rs49975010
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:18619439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATGGGCT AATGTCTCCT
  GTGTGCCAGA GTTCTAGATG GGAGCATTGC TTGAAGCATA TCACGATAGC CCTGTGTGCA
  TAAAGACAGA AAAAGATGTG TTTGGGGTGG ACCAAGAACC CACTGGCTCC GTGTGTAAAG
  GTGTTTCCTA GCAAGTACAA CAACCTGAGT TCTAACTCAG GCAGAAGGAG AAAACTGACT
  W
  TTGATGGACT GATGGTGTCC GTGACACCTA CGCATGCATC ACATACACGC ATCTCTCACT
  CACACACACA TACACACACA CACACACACA CACACACACA CACATGCTTT AGGGGGGAGG
  GCTTTGATAG GCACAGTATT GATGCCTGTA ATCCCAGCAG TTGGAAGGAT AAGGAAAGAG
  GATTGCAAAA AAAAAAAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148463523	ENSMUSSNP1840414	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49975010					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18619439 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pglyrp1	peptidoglycan recognition protein 1			Intron
				Noncoding-Transcript-Variant
Rr642924	regulatory region 642924			824 bp distal
Tssr64752	transcription start site region 64752			805 bp downstream