rs49973524 SNP Detail

Summary

• ID
  rs49973524
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149653018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCC AAGGATGGCC TTGAATTTCC
  S
  ATCCTCCTGC CTCGACTTCT TGTGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148036193	ENSMUSSNP6791453	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
ss321426228	CHEV_4_148942670	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49973524					SNP	C	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149653018 () rs orientation: forward

Symbol	Name	Function Class
Gm13066	predicted gene 13066	771 bp upstream
Gm70645	predicted gene, 70645	within coordinates
Rr604967	regulatory region 604967	897 bp distal
Rr604968	regulatory region 604968	782 bp distal
Rr604969	regulatory region 604969	367 bp distal
Rr604970	regulatory region 604970	33 bp proximal
Rr604971	regulatory region 604971	933 bp proximal