rs49969939 SNP Detail

Summary

• ID
  rs49969939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35402262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGTGGTT TCCGGGTTAC
  TGGTGGTTTC AAAGAATTAA AGGAGTTTGA ACAAACAGGG AAGCAGCGAG GGCTTTTACT
  CAGAAGCAAA GTGAATGCAT GGAGTGGGTG TGAAGCAAAG GAGGAGTGGG CTCAAACAAG
  GCTGCTCAGA ATTCCTCTCT CACCTGGGCA ACTTCCCTGT AAGCCTCCTG AAGAAGGCAG
  R
  GTTGGTTGGT AGGGGCAGCT TGTTTGTGAG CTTTTGCCAG TAAACTATTG GCAGACAGAA
  TCTTGGATCT TCTGTACAGG CATGGGGCAT GGGTATTAAT TAACTATTAT TATTATTATT
  ATTTGGTTTT CCAAGACAGG GTTTCTCTTT ATAGCTCTGG CTGTCTTGGA ACTCACTCTG
  TAGACCAGGC TGGCCTCGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60877171	NES15975781	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49969939					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60877171	NES15975781	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35402262 () rs orientation: forward

Symbol	Name	Function Class
Rr628509	regulatory region 628509	880 bp proximal